Protein Kinase A
UNFOLDPROTEIN(data, bracket) calculates the melting temperature, Tm, of a protein from a given Nx2 array of unfolding data (with N >= 10). In the case of unfolding studies performed using circular dichroism spectroscopy, the second Tm calculated using the maximum of the first derivative of the CD...
|License: Freeware||Size: 10 KB||Download (18): unfoldprotein.m Download|
In this TD game, viruses or germs will intrude into human body aiming to take away protein, the essential organic compound for human life. They will swarm as well as transfer protein. Thus a barrage of human immunity cell must be build to protect human body. ? List of Cells: - B Cell: humoral...
|License: Shareware||Cost: $0.99 USD||Size: 7.7 MB||Download (7): Cell TD Download|
'Proteins' is a database for protein sequences. A tool that many scientists need every day. Very often, sequences of proteins have to be looked up quickly or properties like extinction coefficients have to be calculated. 'Proteins' neatly arranges your fa
|License: Shareware||Cost: $6.99 USD||Size: 1.7 MB||Download (29): Proteins Download|
Bio::Tools::Run::PiseApplication::consensus is a Perl module. Bioperl class for: CONSENSUS Identification of consensus patterns in unaligned DNA and protein sequences (Hertz, Stormo) References: G.Z. Hertz and G.D. Stormo. Identification of consensus patterns in unaligned DNA and protein...
|License: Freeware||Size: 829.44 KB||Download (76): Bio::Tools::Run::PiseApplication::consensus Download|
This app suggests, illustrates, and specifies the daily quantities of the Essential Amino Acids (10 Amino Acids); up to date in medical research. It categorizes users to six groups: - Newborns up to 12 months - Older than 12 months - 2 years - Older than 2 years - 3 years - Older than 3 years -...
|License: Shareware||Cost: $0.99 USD||Size: 102.4 KB||Download (9): Essential Amino Acids Download|
This program is a bioinformatics tool developed for helping biologists finding patterns from a set of protein sequences. The method is the first one that fully utilizes the advantages of the Dirichlet mixture models. It starts from a random pattern and iteratively improves the Bayesian log-odds...
|License: Shareware||Cost: $0.00 USD||Size: 2.94 MB||Download (18): Find an ungapped pattern window from a set of protein sequences Download|
HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures. Features . Protein Structure Quality...
|License: Freeware||Size: 2.29 MB||Download (16): HOPPscore - Protein Structure Quality Download|
Bio::Tools::Run::TribeMCL is a method for clustering proteins into related groups, which are termed protein families. SYNOPSIS use Bio::Tools::Run::TribeMCL; use Bio::SearchIO; # 3 methods to input the blast results # straight forward raw blast output (NCBI or WU-BLAST) my @params =...
|License: Freeware||Size: 829.44 KB||Download (183): Bio::Tools::Run::TribeMCL Download|
PROMPT is a system for retrieval, analysis, mapping and comparison of protein sets. It allows easy mapping of different types of sequence identifiers, automatic data retrieval and integration, many analysis and comparison algorithms, and a full-featured GUI application. Exhaustive statistical...
|License: Shareware||Cost: $0.00 USD||Size: 26 MB||Download (85): PROMPT Download|
ProtAnnot is a small, Java based application is a protein annotation viewer that displays protein annotations in the context of the genomic sequence.
This software is a making it easy to see how alternative mRNA structures affect the various protein products encoded at a locus. for WindowsAll
|License: Freeware||Download (46): ProtAnnot Download|
The Genome Positioning System (GPS) is a software tool to study protein-DNA interaction using ChIP-Seq data. GPS builds a probabilistic mixture model to predict the most likely positions of binding events at single-base resolution.
GPS is a Java software, so it runs on multiple platforms,...
|License: Freeware||Download (56): GPS Download|
TMRPres2D or TransMembrane protein Re-Presentation in 2 Dimensions for long, is a small, easy to use application designed to automate the creation of uniform, two-dimensional, high analysis graphical images/models of alpha-helical or beta-barrel transmembrane proteins.
Protein sequence data and...
|License: Freeware||Download (55): TMRPres2D Download|
Main Workbench includes all features from CLC DNA Workbench, CLC RNA Workbench, and CLC Protein Workbench, as well as a range of Gene Expression Analysis.
CLC Main Workbench creates a software environment enabling users to make a large number of advanced protein sequence analyses, combined with...
Platforms: Windows, XP, Windows Vista, XPX64, 7, 7x64
|License: Freeware||Download (57): CLC Main Workbench Download|
This is a very easy to use desktop application that will alert you whenever new articles are added to Whey Protein Review.com. Simply install the software and any time new content is added to the website, you will receive an alert on your desktop letting you know, and showing you part of the...
|License: Freeware||Size: 656 KB||Download (27): Whey Protein Review Desktop Alert Download|
GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 3.62 MB||Download (28): GRaPe - Gene Reaction Protein Builder Download|
The Protein Geometry Database hosts the development code for a flexible database for searching protein geometry, as well as a library for accessing this data for protein modeling & refinement programs.
Platforms: Windows, Mac, Linux
|License: Freeware||Size: 96.13 KB||Download (29): Protein Geometry Database Download|
This contest concerns a very simplified two-dimensional version of the protein folding problem. Given the amino acid sequence of a simplified protein, your job is to determine a final "optimally folded" configuration. Each potential arrangement of the protein sequence is associated with an energy...
|License: Freeware||Size: 10 KB||Download (20): MATLAB Contest Protein Download|
StarORF facilitates the identification of the protein(s) encoded within a DNA sequence. Using StarORF, the DNA sequence is first transcribed into RNA and then translated into all the potential ORFs (Open Reading Frame) encoded within each of the six translation frames (3 in the forward direction...
|License: Shareware||Cost: $0.00 USD||Size: 122.88 KB||Download (17): StarORF Download|
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
|License: Freeware||Size: 9.61 MB||Download (22): FSA For Linux Download|
Cscape is an application for visualizing and navigating through data from a Reverse Phase Protein Microarray (RPMA). Cscape uses the Google Maps API to map the RPMA data on top of an image of a cancer cell and its associated pathways.
|License: Freeware||Size: 1.25 MB||Download (16): Cscape (Cancer Landscape) Download|